diff --git a/pkg/services/ngalert/models/alert_rule.go b/pkg/services/ngalert/models/alert_rule.go
index fb5ecad3970..3f95cfd8b62 100644
--- a/pkg/services/ngalert/models/alert_rule.go
+++ b/pkg/services/ngalert/models/alert_rule.go
@@ -153,6 +153,10 @@ const (
 	// MigratedMessageAnnotation is created during legacy migration to store the migrated alert message.
 	MigratedMessageAnnotation = "message"
 
+	// ConvertedPrometheusRuleLabel is a label that indicates that the alert rule was converted from a Prometheus rule
+	// using the import APIs.
+	ConvertedPrometheusRuleLabel = "__converted_prometheus_rule__"
+
 	// AutogeneratedRouteLabel a label name used to distinguish alerts that are supposed to be handled by the autogenerated policy. Only expected value is `true`.
 	AutogeneratedRouteLabel = "__grafana_autogenerated__"
 	// AutogeneratedRouteReceiverNameLabel a label name that contains the name of the receiver that should be used to send notifications for the alert.
diff --git a/pkg/services/ngalert/prom/convert.go b/pkg/services/ngalert/prom/convert.go
index df0adedbff5..e4ab9ce0a60 100644
--- a/pkg/services/ngalert/prom/convert.go
+++ b/pkg/services/ngalert/prom/convert.go
@@ -231,10 +231,13 @@ func (p *Converter) convertRule(orgID int64, namespaceUID string, promGroup Prom
 		title = rule.Alert
 	}
 
-	labels := make(map[string]string, len(rule.Labels)+len(promGroup.Labels))
+	labels := make(map[string]string, len(rule.Labels)+len(promGroup.Labels)+1)
 	maps.Copy(labels, promGroup.Labels)
 	maps.Copy(labels, rule.Labels)
 
+	// Add a special label to indicate that this rule was converted from a Prometheus rule.
+	labels[models.ConvertedPrometheusRuleLabel] = "true"
+
 	originalRuleDefinition, err := yaml.Marshal(rule)
 	if err != nil {
 		return models.AlertRule{}, fmt.Errorf("failed to marshal original rule definition: %w", err)
diff --git a/pkg/services/ngalert/prom/convert_test.go b/pkg/services/ngalert/prom/convert_test.go
index 9fed80776e7..1d4668d2b27 100644
--- a/pkg/services/ngalert/prom/convert_test.go
+++ b/pkg/services/ngalert/prom/convert_test.go
@@ -322,6 +322,7 @@ func TestPrometheusRulesToGrafana(t *testing.T) {
 				expectedLabels := make(map[string]string, len(promRule.Labels)+len(tc.promGroup.Labels))
 				maps.Copy(expectedLabels, tc.promGroup.Labels)
 				maps.Copy(expectedLabels, promRule.Labels)
+				expectedLabels = withInternalLabel(expectedLabels)
 
 				uidData := fmt.Sprintf("%d|%s|%s|%d", tc.orgID, tc.namespace, tc.promGroup.Name, j)
 				u := uuid.NewSHA1(uuid.NameSpaceOID, []byte(uidData))
@@ -550,11 +551,11 @@ func TestPrometheusRulesToGrafana_GroupLabels(t *testing.T) {
 		// Check that the labels are merged and the rule label takes precedence
 		require.Equal(
 			t,
-			map[string]string{
+			withInternalLabel(map[string]string{
 				"group_label":  "group_value",
 				"rule_label":   "rule_value",
 				"common_label": "rule_value",
-			},
+			}),
 			grafanaGroup.Rules[0].Labels,
 		)
 	})
@@ -586,11 +587,11 @@ func TestPrometheusRulesToGrafana_GroupLabels(t *testing.T) {
 		// Check that the labels are merged and the rule label takes precedence
 		require.Equal(
 			t,
-			map[string]string{
+			withInternalLabel(map[string]string{
 				"group_label":  "group_value",
 				"rule_label":   "rule_value",
 				"common_label": "rule_value",
-			},
+			}),
 			grafanaGroup.Rules[0].Labels,
 		)
 	})
@@ -614,8 +615,7 @@ func TestPrometheusRulesToGrafana_GroupLabels(t *testing.T) {
 		grafanaGroup, err := converter.PrometheusRulesToGrafana(1, "namespace", promGroup)
 		require.NoError(t, err)
 		require.Len(t, grafanaGroup.Rules, 1)
-
-		require.Equal(t, promGroup.Labels, grafanaGroup.Rules[0].Labels)
+		require.Equal(t, withInternalLabel(promGroup.Labels), grafanaGroup.Rules[0].Labels)
 	})
 
 	t.Run("rule and group with nil labels", func(t *testing.T) {
@@ -633,7 +633,7 @@ func TestPrometheusRulesToGrafana_GroupLabels(t *testing.T) {
 		grafanaGroup, err := converter.PrometheusRulesToGrafana(1, "namespace", promGroup)
 		require.NoError(t, err)
 		require.Len(t, grafanaGroup.Rules, 1)
-		require.Empty(t, grafanaGroup.Rules[0].Labels)
+		require.Equal(t, withInternalLabel(map[string]string{}), grafanaGroup.Rules[0].Labels)
 	})
 }
 
@@ -847,3 +847,12 @@ func TestQueryModelContainsRequiredParameters(t *testing.T) {
 		require.True(t, isNumber, "maxDataPoints should be a number")
 	}
 }
+
+func withInternalLabel(l map[string]string) map[string]string {
+	result := map[string]string{
+		models.ConvertedPrometheusRuleLabel: "true",
+	}
+	maps.Copy(result, l)
+
+	return result
+}