diff --git a/public/app/plugins/panels/graph/graph.js b/public/app/plugins/panels/graph/graph.js
index 31c4e541f40..39c1c6707c1 100755
--- a/public/app/plugins/panels/graph/graph.js
+++ b/public/app/plugins/panels/graph/graph.js
@@ -380,11 +380,11 @@ function (angular, $, moment, _, kbn, GraphTooltip) {
             options.yaxes.push(secondY);
 
             applyLogScale(options.yaxes[1], data);
-            configureAxisMode(options.yaxes[1], scope.panel.y_formats[1]);
+            configureAxisMode(options.yaxes[1], scope.panel.percentage && scope.panel.stack ? "percent" : scope.panel.y_formats[1]);
           }
 
           applyLogScale(options.yaxes[0], data);
-          configureAxisMode(options.yaxes[0], scope.panel.y_formats[0]);
+          configureAxisMode(options.yaxes[0], scope.panel.percentage && scope.panel.stack ? "percent" : scope.panel.y_formats[0]);
         }
 
         function applyLogScale(axis, data) {